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Wyszukujesz frazę "Morrison, Kyle" wg kryterium: Autor


Wyświetlanie 1-5 z 5
Tytuł:
Location‐scale meta‐analysis and meta‐regression as a tool to capture large‐scale changes in biological and methodological heterogeneity : a spotlight on heteroscedasticity
Autorzy:
Mizuno, Ayumi
Morrison, Kyle
Williams, Coralie
Ricolfi, Lorenzo
Nakagawa, Shinichi
Yang, Yefeng
Drobniak, Szymon
Lagisz, Malgorzata
Opis:
Heterogeneity is a defining feature of ecological and evolutionary meta-analyses. While conventional meta-analysis and meta-regression methods acknowledge heterogeneity in effect sizes, they typically assume this heterogeneity is constant across studies and levels of moderators (i.e., homoscedasticity). This assumption could mask potentially informative patterns in the data. Here, we introduce and develop a location-scale meta-analysis and meta-regression framework that models both the mean (location) and variance (scale) of effect sizes. Such a framework explicitly accommodates heteroscedasticity (differences in variance), thereby revealing when and why heterogeneity itself changes. This capability, we argue, is crucial for understanding responses to global environmental change, where complex, context-dependent processes may shape both the average magnitude and the variability of biological responses. For example, differences in study design, measurement protocols, environmental factors, or even evolutionary history can lead to systematic shifts in variance. By incorporating hierarchical (multilevel) structures and phylogenetic relationships, location-scale models can disentangle the contributions from different levels to both location and scale parts. We further attempt to extend the concepts of relative heterogeneity and publication bias into the scale part of meta-regression. With these methodological advances, we can identify patterns and processes that remain obscured under the constant variance assumption, thereby enhancing the biological interpretability and practical relevance of meta-analytic results. Notably, almost all published ecological and evolutionary meta-analytic data can be re-analysed using our proposed analytic framework to gain new insights. Altogether, location-scale meta-analysis and meta-regression provide a rich and holistic lens through which to view and interpret the intricate tapestry woven with ecological and evolutionary data. The proposed approach, thus, ultimately leads to more informed and context-specific conclusions about environmental changes and their impacts.
Dostawca treści:
Repozytorium Uniwersytetu Jagiellońskiego
Artykuł
Tytuł:
Harnessing meta-analyses’ insights in ecology and evolution research
Autorzy:
Mizuno, Ayumi
Pollo, Pietro
Morrison, Kyle
Tam, Jesse
Williams, Coralie
Martinig, April Robin
Ricolfi, Lorenzo
Nakagawa, Shinichi
Pottier, Patrice
Yang, Yefeng
Drobniak, Szymon
Lagisz, Malgorzata
Opis:
Meta-analyses are powerful tools to synthesize the literature in several fields of study, including ecology and evolution. However, it remains uncertain whether ecologists and evolutionary biologists fully comprehend meta-analyses’ findings or effectively apply them when citing these studies in their own research. Here, we first discuss key meta-analytical concepts and provide a guide to researchers in ecology and evolution on how to harness meta-analyses’ insights. For instance, we clarify the meaning of effect sizes and heterogeneity to improve understanding of meta-analyses’ quantitative findings. In addition, we analysed articles published in 2023 in ecology and evolution to investigate how frequently and in what context meta-analyses were cited. We found that approximately 21% of articles cited at least one meta-analysis, and that the relative number of citations of meta-analyses (0.62% of all citations analysed) was greater than the publication frequency of meta-analytical articles (0.44% of all articles). Most importantly, we found that while the direction of mean effect sizes from cited meta-analyses was often mentioned, the magnitude of effect sizes and the limitations of the data analysed were frequently overlooked. These findings underscore the need for improved citation practices of meta-analyses in ecological and evolutionary research, which our recommendations seek to promote.
Dostawca treści:
Repozytorium Uniwersytetu Jagiellońskiego
Artykuł
Tytuł:
Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions
Autorzy:
Ma, Charles
Supplee, Julianna
Zhang, Sa
Kreil, David Philip
Blomquist, Thomas M.
Tom, Nikola
Xiao, Chunlin
Li, Weihua
LoCoco, Jennifer S.
Jones, Wendell
Megherbi, Dalila B.
Hipp, Jennifer
Horvath, Kyle
Strahl, Maya
Marella, Narasimha
Silla-Castro, Juan Carlos
López, Mario Solís
Qu, Wubin
Liang, Yu
Verma, Suman
Eterovic, Agda Karina
Pirooznia, Mehdi
Pabón-Peña, Carlos
Ghosal, Abhisek
Craig, Daniel J.
Chen, Tao
Hennigan, Brittany
Deveson, Ira W.
Qiu, Fujun
Chang, Chia-Jung
del Pozo, Angela
Tang, Lin-ya
Yip, Shun H.
Duncan, Daniel
Hu, Jianhong
Stetson, Daniel
Shi, Tieliu
Li, Quan-Zhen
Shaknovich, Rita
Chin, Christopher R.
Richmond, Todd A.
Willey, James C.
Bhandari, Ambica
Sebra, Robert
Zhang, Guangliang
Burgess, Daniel
Tichý, Boris
Jarosz, Mirna
Liu, Liang-Chun
Fan, Xiaohui
Szankasi, Philippe
Bushel, Pierre R.
Haseley, Nathan
Gong, Binsheng
Scherer, Andreas
Glenn, Sean
Crawford, Erin
Hong, Huixiao
Martín-Arenas, Rubén
Hung, Li-Yuan
Wirta, Valtteri
Chaubey, Alka
Bao, Wenjun
Li, Zhiguang
Shi, Leming
Zhou, Xiaoyan
Kerkhof, Jennifer
Lader, Eric
Garcia, Elena Vallespin
Chierici, Marco
Xu, Shibei
Li, Dan
Xu, Joshua
Liu, Zhichao
Morrison, Tom
Walker, Kimbley
Tan, Haowen
Mason, Christopher E.
Johann, Donald J.
Łabaj, Paweł
Butler, Daniel J.
Wang, Junwen
Best, Hunter
Ning, Baitang
Parsons, Barbara L.
Arib, Hanane
Thierry-Mieg, Danielle
Lapunzina, Pablo
Blackburn, James
Tao, Yonghui
Wang, Charles
Thomas, David
Zhao, Meiru
Happe, Scott
Cai, Wanshi
Zheng, Yuanting
Stuart, Alan
Shi, Qiang
Sadikovic, Bekim
Giorda, Kristina
Boardman, Lisa
Wen, Zhining
Kusko, Rebecca
Xu, Chang
Raymond, Amelia
Chen, Guangchun
Mittal, Vinay K.
Hang, Xinyi
Meng, Qingchang
Zhang, Yifan
Li, Peng
Wang, Yexun
Thakkar, Shraddha
Thodima, Venkat J.
Wilkins, Katherine
Tong, Weida
Mieczkowski, Piotr A.
Lucas, Anne Bergstrom
Cooley Coleman, Jessica
Liu, Shaoqing
Ringler, Rebecca
Lai, Kevin
Schulze, Egbert
Yu, Ying
Mercer, Timothy
Muzny, Donna
Guan, Meijian
Yang, Mary
Rindler, Paul
Song, Ping
Paweletz, Cloud P.
Wu, Leihong
Bao, Longlong
Kipp, Benjamin
Attwooll, Claire
Wang, Shangzi
Haag, Christine
Smith, Melissa
Thierry-Mieg, Jean
Furlanello, Cesare
Bisgin, Halil
Ying, Jianming
Novoradovskaya, Natalia
Zhang, Zhihong
Babson, Kevin
Close, Devin
Conroy, Jeffrey
Burgher, Blake
Xiao, Wenzhong
Cawley, Simon
Foox, Jonathan
Opis:
Targeted sequencing using oncopanels requires comprehensive assessments of accuracy and detection sensitivity to ensure analytical validity. By employing reference materials characterized by the U.S. Food and Drug Administration-led SEquence Quality Control project phase2 (SEQC2) effort, we perform a cross-platform multi-lab evaluation of eight Pan-Cancer panels to assess best practices for oncopanel sequencing.
Dostawca treści:
Repozytorium Uniwersytetu Jagiellońskiego
Artykuł
    Wyświetlanie 1-5 z 5

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