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Wyświetlanie 1-10 z 23
Tytuł:
orchaRd 2.0 : an R package for visualising meta-analyses with orchard plots
Autorzy:
Noble, Daniel W. A.
Pottier, Patrice
O'Dea, Rose E.
Rutkowska, Joanna
Nakagawa, Shinichi
Yang, Yefeng
Lagisz, Malgorzata
Senior, Alistair M.
Opis:
1. Although meta-analysis has become an essential tool in ecology and evolution, reporting of meta-analytic results can still be much improved. To aid this, we have introduced the orchard plot, which presents not only overall estimates and their confidence intervals, but also shows corresponding heterogeneity (as prediction intervals) and individual effect sizes. 2. Here, we have added significant enhancements by integrating many new functionalities into orchaRd 2.0. This updated version allows the visualisation of heteroscedasticity (different variances across levels of a categorical moderator), marginal estimates (e.g. marginalising out effects other than the one visualised), conditional estimates (i.e. estimates of different groups conditioned upon specific values of a continuous variable) and visualisations of all types of interactions between two categorical/continuous moderators. 3. orchaRd 2.0 has additional functions which calculate key statistics from multilevel meta-analytic models such as $I^{2}$ and $R^{2}$. Importantly, orchaRd 2.0 contributes to better reporting by complying with PRISMA-EcoEvo (preferred reporting items for systematic reviews and meta-analyses in ecology and evolution). Taken together, orchaRd 2.0 can improve the presentation of meta-analytic results and facilitate the exploration of previously neglected patterns. 4. In addition, as a part of a literature survey, we found that graphical packages are rarely cited (~3%). We plea that researchers credit developers and maintainers of graphical packages, for example, by citations in a figure legend, acknowledging the use of relevant packages.
Dostawca treści:
Repozytorium Uniwersytetu Jagiellońskiego
Artykuł
Tytuł:
Sex‐specific effects of social environment on behaviour and their correlations in Drosophila melanogaster
Autorzy:
Neely, G. Gregory
Ahmed, Radiah
Burke, Samantha
Nakagawa, Shinichi
Pottier, Patrice
Hamoudi, Zina
Hart, Chloe
Drobniak, Szymon
Lin, Yong Qi
Macartney, Erin L.
Opis:
Environmental and individual experiences can result in immediate and persistent changes in behaviour. Often, such effects are also sex-dependent. Intraspecific interactions can be one of the most important environments an individual faces. Such social interactions are expected to affect a suite of behavioural traits and their correlations. Here, we used Drosophila melanogaster and high-throughput automated behavioural phenotyping to determine how social environment (group mixed sex, group single sex, and social isolation) and sex interact to affect basic behaviours (exploration, movement within a y-maze, and habituation to a startle) that likely underlie more complex behaviours such as mate searching and foraging. We show that such behaviours and some behavioural correlations are indeed context- and sex-dependent. Males tended to show greater exploration, while females were more likely to show a habituation response to startle. Males and females from the mixed sex and isolated treatments showed opposite exploratory behaviour in the Y-maze, and social treatment interacted with sex to affect the rate of habituation to a startle. Females also tended to have slightly stronger trait correlations compared to males. These results show that social environment and sex can play a significant role in shaping behaviour in Drosophila melanogaster. Our study provides insights into how the type of social stimulation and sex can interact to affect behaviours that are important in forming critical behaviours related to foraging and mate searching.
Dostawca treści:
Repozytorium Uniwersytetu Jagiellońskiego
Artykuł
Wyświetlanie 1-10 z 23

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