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Wyświetlanie 1-8 z 8
Tytuł:
Polihistydylowe sekwencje z motywem His-tag – ich rola i biologiczne znaczenie oddziaływania z jonami metali
Polyhistidine sequences with His-tag motif – their role and biological significance of interaction with metal ions
Autorzy:
Wątły, J.
Kozłowski, H.
Tematy:
histydyna
His-tag
jony metali
białka
histidine
His-tag motif
metal ions
proteins
Pokaż więcej
Wydawca:
Polskie Towarzystwo Chemiczne
Powiązania:
https://bibliotekanauki.pl/articles/172145.pdf  Link otwiera się w nowym oknie
Opis:
His-tags are specific sequences containing six to nine subsequent histydyl residues and they are used commercially in immobilized metal affinity chromatography (IMAC) as molecular ‘anchors’ that bind to a metal ion (usually nickel), immobilized by chelation with nitrilotriacetic acid (NTA) bound to a solid support [37, 38]. Consecutive histidines are the common denominator for both His-tags used in molecular biology and for quite remote biological phenomena – more than 2000 histidine- rich proteins (HRPs) are found in microorganisms including 60% and 82% of archaeal and bacterial species, respectively and their roles are not well characterized [73]. The physicochemical properties of histidine make it a versatile amino acid that influences protein conformation and enzymatic activity [15]. Many natural proteins with a His-tag domain are assigned to different functions, for example: most bacterial proteins, containing this motif are probably involved in the homeostasis of nickel ions [68, 76], while others, e.g. newly isolated peptides from the venom of the snake genus Atheris contain poly-histidyl-poly-glycyl sequences (pHpG) can act on the cardiovascular system by inhibiting snake venom metalloproteinases and affect its function by acting on specific receptors [58, 62]. His-rich motifs have been found also e.g. in Zn2+ transporters, prion proteins, His-rich glycoproteins, transcription factors or numerous copper-binding proteins [56, 67, 84]. Binding mode and the thermodynamic properties of the system depends on the specific metal ion and the histidine sequence. Despite the wide application of the His-tag for purification of proteins, little is known about the properties of metalbinding to such tag domain. Recent experimental and theoretical studies have shown that metal ions, e.g. Cu2+ can bind to various sets of imidazoles depending on the number of histidine residues that are located in His-rich sequences. The occurrence of polymorphic binding states and the formation of an α-helical structure induced by metal ion coordination suggest that proteins with a His-tag domain may serve as the dynamic site able to ‘move’ metal ions along the tag sequence [99, 100]. This might explain the frequent occurrence of such sequences in bacterial Ni2+ chaperones, which transfer the metal ion between different proteins.
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Overproduction and purification of the CcpA protein from Lactococcus lactis.
Autorzy:
Kowalczyk, Magdalena
Bardowski, Jacek
Tematy:
His-tag
cross links
dimers
CcpA
Pokaż więcej
Wydawca:
Polskie Towarzystwo Biochemiczne
Powiązania:
https://bibliotekanauki.pl/articles/1043621.pdf  Link otwiera się w nowym oknie
Opis:
In this work we present cloning and overexpression of lactococcal CcpA protein in Escherichia coli Xl1blue strain as a fusion with 6×His tag. A high yield of the CcpA protein was obtained when the cells were cultured in liquid medium LB with 100 Μg/ml ampicillin at 37°C and subsequently for 4 h after induction by IPTG. The procedure let us obtain 5 mg of homogenous CcpA protein. Glutaraldehyde crosslinking analysis indicated the formation of dimer or tetramer forms of the CcpA protein.
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Expression in Escherichia coli of human ARHGAP6 gene and purification of His-tagged recombinant protein.
Autorzy:
Ochocka, Anna-Maria
Czyżewska, Marzena
Pawełczyk, Tadeusz
Tematy:
His-tag
IbpB
ARHGAP6
IbpA
Pokaż więcej
Wydawca:
Polskie Towarzystwo Biochemiczne
Powiązania:
https://bibliotekanauki.pl/articles/1043671.pdf  Link otwiera się w nowym oknie
Opis:
In this report we describe cloning and expression of human Rho GTPase activating protein (ARHGAP6) isoform 4 in Escherichia coli cells as a fusion protein with 6xHis. We cloned the ARHGAP6 cDNA into the bacterial expression vector pPROEX-1. Induction of the 6xHis-ARHGAP6 protein in BL21(DE3) and DH5α cells caused lysis of the cells irrespective of the kind of culture medium used. Successful expression of the fusion protein was obtained in the MC4100Δibp mutant strain lacking the small heat-shock proteins IbpA and IbpB. Reasonable yield was obtained when the cells were cultured in Terrific Broth + 1% glucose medium at 22°C for 16 h. The optimal cell density for expression of soluble 6xHis-ARHGAP6 protein was at A_600 about 0.5. Under these conditions over 90% of the fusion protein was present in a soluble form. The 6xHis-ARHGAP6 protein was purified to near homogeneity by a two step procedure comprising chromatography on Ni-nitrilotriacetate and cation exchange columns. The expression system and purification procedure employed made it possible to obtain 1-2 mg of pure 6xHis-ARHGAP6 protein from 300 ml (1.5 g of cells) of E. coli culture.
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Binding analysis of selected derivatives of His3-tag to H3T aptamer
Analiza wiązania wybranych pochodnych metki fuzyjnej His3 do aptameru H3T
Autorzy:
Mazurek, Martyna
Opis:
One of the most commonly used fusion tags to purify recombinant proteins is the polyhistidyl tag. Immobilized metal ion affinity chromatography (IMAC) is one of the most widely employed purification techniques for His-tagged proteins. This system is based on specific and reversible binding of histidyl residues to immobilized divalent metal ions. Elution conditions of protein bound to IMAC resin, i.e. the low pH, the presence of imidazole or divalent metal ions, may interfere with biological activity of the protein being purified. Therefore, a new chromatography system to purify proteins containing the polyhistidyl tag has been developed. It is based on the H3T aptamer which specifically binds three consecutive histidine residues (His3) as a ligand. The stability of the His3-tag/H3T aptamer complex is regulated by sodium ion concentration, which allows protein elution under mild buffer conditions. The aim of this study was to compare binding of selected derivatives of His-tag to the H3T aptamer.Constructed vectors coding for His3-tag derivatives, i.e. HGHGH-; HHGH-; HHGGH-; HHGGGH-; HH-; fused to N-terminus of GST were used for proteins production followed by their purification. Binding analysis of the GST protein variants to the H3T aptamer did not reveal their higher affinity in comparison to His3-GST.
Jedną z najpowszechniej stosowanych metek fuzyjnych umożliwiających oczyszczanie białek rekombinowanych jest metka polihistydylowa (His-tag). Chromatografia metalopowinowactwa (IMAC) stanowi jedną z najczęściej stosowanych technik oczyszczania białek zawierających metkę His. Metoda ta oparta jest na specyficznym i odwracalnym wiązaniu się reszt histydylowych do zimmobilizowanych na złożu jonów metali dwuwartościowych. Warunki elucji białka z metką His ze złoża IMAC tj. niskie pH, obecność imidazolu lub jonów metalu dwuwartościowego mogą prowadzić do zaburzeń aktywności biologicznej oczyszczanego białka. Dlatego też opracowany został nowy system oczyszczania białek zawierających metkę histydylową, wykorzystujący jako ligand aptamer DNA (H3T) specyficznie wiążący trzy kolejne reszty histydylowe (His3). Stabilność kompleksu His3/aptamer H3T regulowana jest obecnością jonów sodu, co umożliwia prowadzenie elucji w łagodnych warunkach buforowych. Celem niniejszej pracy była analiza wiązania wybranych pochodnych metki histydylowej do aptameru H3T.Stworzone konstrukty genetyczne kodujące pochodne metki histydylowej, tj. HGHGH-; HHGH-; HHGGH-; HHGGGH-; HH- , dołączone na N-końcu białka GST umożliwiły produkcję i oczyszczenie pożądanych białek. Analiza wiązania pochodnych metki histydylowej do aptameru H3T nie wykazała zwiększonego powinowactwa żadnej z nich w porównaniu z metką His3.
Dostawca treści:
Repozytorium Uniwersytetu Jagiellońskiego
Inne
Tytuł:
Oczyszczanie rekombinowanej deepoksydazy VDE okrzemek Phaeodactylum tricornutum UTEX 646 z bakterii Escherichia coli
Purification of recombinant de-epoxidase VDE of diatoms Phaeodactylum tricornutum UTEX 646 strain from Escherichia coli Origami B strain
Autorzy:
Strączek, Agnieszka
Opis:
Deepoksydaza wiolaksantynowa VDE to enzym cyklu ksantofilowego katalizujący reakcję deepoksydacji ksantofili w warunkach intensywnego oświetlenia. U jednego z gatunku okrzemek Phaeodactylum tricornutum wykazano istnienie trzech białek odpowiadających za usuwanie ugrupowań epoksydowych – PtVDE, PtVDL1 oraz PtVDL2. Deepoksydaza PtVDE okrzemek Ph. tricornutum wykazuje wysoką homologię z deepoksydazą VDE roślin wyższych. Celem niniejszej pracy było oczyszczanie rekombinowanej deepoksydazy PtVDE okrzemek Phaeodactylum tricornutum, szczep UTEX 646 z osadu bakterii Escherichia coli, szczep Origami B (DE3). Ekspresja rekombinowanej deepoksydazy PtVDE została uzyskana w komórkach bakterii E. coli, szczep Origami B z wykorzystaniem wektora pET-15b. Otrzymane rekombinowane białko ma dołączony na N-końcu heksapeptyd His(6), dzięki czemu białko to oczyszczano metodą chromatografii metalopowinowactwa na złożu kobaltowym TALON.
Violaxanthin de-epoxidase VDE, the xanthophyll cycle enzyme, catalyzes the de-epoxidation of xanthophylls under intense light condition. It has been proved that Phaeodactylum tricornutum, one of the diatoms species, has three proteins responsible for removing epoxide groups – PtVDE, PtVDL1 and PtVDL2. Diatoms Phaeodactylum tricornutum de-epoxidase PtVDE is similar to the VDE of higher plants. The aim of this study was the purification of recombinant de-epoxidase VDE of Phaeodactylum tricornutum UTEX 646 strain from Escherichia coli Origami B (DE3) strain. The expression of recombinant de-epoxidase PtVDE had been obtained in E. coli cells Origami B strain by using pET-15b vector. Recombinant protein contained on the N-terminus a short affinity tag consisting of poly-histidine residues (6xHistidine residues). The His-tag enabled purification of the protein with metal affinity chromatography on cobalt-charged TALON.
Dostawca treści:
Repozytorium Uniwersytetu Jagiellońskiego
Inne
Tytuł:
The cell-free protein biosynthesis - applications and analysis of the system.
Autorzy:
Lamla, Thorsten
Mammeri, Kerstin
Erdmann, Volker
Tematy:
in vitro protein biosynthesis
ribosome display
2D-gel elctrophoresis
His-tag and function
in vitro evolution of proteins
Strep-tag affinity peptide
Pokaż więcej
Wydawca:
Polskie Towarzystwo Biochemiczne
Powiązania:
https://bibliotekanauki.pl/articles/1044140.pdf  Link otwiera się w nowym oknie
Opis:
The in vitro protein biosynthesis has the potentials to become a powerful technology for biochemical research. Beside the determination of structure and function the in vitro evolution of proteins is also of great interest. The system described was used to produce bovine heart fatty acid binding protein (FABP) and bacterial chloramphenicol acetyltransferase (CAT) with and without fusion of the Strep-tag II affinity peptide. The proteins were purified after and during protein biosynthesis by using a StrepTactin Sepharose matrix. No significant influence of the Strep-tag and the conditions during the affinity chromatography on maturation or activity of the protein was observed. The in vitro evolution of proteins is feasible by means of ribosome display. The selection of a specific mRNA coding for a shortened FABP with a N-terminal His-tag via the accompanying protein property was shown. Goal of the selection was to bind the FABP via the His-tag on Ni(II)-IDA-agarose. After nine cycles of transcription, translation, affinity selection and RT-PCR the protein with the His-tag could be enriched 108-fold. In order to correlate a possible relationship between changes in protein population and biological function studies were initiated in which 2-dimensional protein patterns of the total in vitro system were compared after 0 and 2 h reaction time. The very interesting findings are that a number of proteins disappear, while others are newly formed during protein synthesis.
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Effects of the polyhistidine tag on kinetics and other properties of trehalose synthase from Deinococcus geothermalis
Autorzy:
Panek, Anna
Pietrow, Olga
Filipkowski, Paweł
Synowiecki, Józef
Tematy:
trehalose
trehalose synthase
Escherichia coli
gene expression
Deinococcus geothermalis
influence of His6-tag
Pokaż więcej
Wydawca:
Polskie Towarzystwo Biochemiczne
Powiązania:
https://bibliotekanauki.pl/articles/1039568.pdf  Link otwiera się w nowym oknie
Opis:
Two recombinant trehalose synthases from Deinococcus geothermalis (DSMZ 11300) were compared. A significant influence of the artificial polyhistidine tag was observed in protein constitution. The recombinant trehalose synthase from D. geothermalis with His6-tag has a higher Km value of 254 mM, in comparison with the wild-type trehalose synthase (Km 170 mM), and displayed a lower activity of maltose conversion when compared to the wild type. Moreover, differences in properties like temperature, pH, thermal- and pH-stability were observed. Presence of the histidine tag caused a decrease of thermal resistance in case of trehalose synthase with His6-tag. These data confirmed a suggestion that the introduction of the histidine domain produces in some seldom cases undesirable changes in the protein.
Dostawca treści:
Biblioteka Nauki
Artykuł
    Wyświetlanie 1-8 z 8

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